OPERA Model Calculation Details: Biodeg. Half-Life

Structural image of N~2~-{[(9H-Fluoren-9-yl)methoxy]carbonyl}-N~6~-[(4-methoxyphenyl)(diphenyl)methyl]-L-lysine
Chemical Identifiers
Preferred name: N~2~-{[(9H-Fluoren-9-yl)methoxy]carbonyl}-N~6~-[(4-methoxyphenyl)(diphenyl)methyl]-L-lysine
DTXSID: DTXSID40465311
DTXCID: DTXCID30416130
CASRN: 159857-60-0
Molecular weight: 640.78
Model Results
Model name: OPERA_BioDeg
Model source: OPERA2.8
Property name: Biodeg. Half-Life
Property description: Biodegradation half-life for compounds containing only carbon and hydrogen
Experimental value: Experimental value from OPERA2.8
 N/A
Predicted value: Predicted value from the model
72.4 days
Confidence level:  Confidence level is calculated from the accuracy of the predictions of the five nearest neighbors weighted by their distance to the query chemical
0.485
Combined applicability domain:  Combined applicability domain from multiple AD measures
Outside training set (
Global AD  Global applicability domain via the leverage approach
= 0) and poor local representation (
Local AD index Local applicability domain index is relative to the similarity of the query chemical to its five nearest neighbors from the training set
= 0.204 < 0.4)
Model Performance
Biodeg. Half-Life Model Results Histogram of Biodeg. Half-Life Data
Weighted kNN model statistics
Training (75%) 5-fold CV (75%) Test (25%)
R2 RMSE Q2 RMSE R2 RMSE
0.88 0.26 0.89 0.25 0.75 0.38

Model summary in QSAR Model Reporting Format (QMRF)
Nearest Neighbors from Model Knowledge Base
Neighbor: 1
Measured:  141 days
Predicted: Five fold cross validation prediction for the neighbor
 120  days

Structural image of 11H-Benzo[a]fluorene
11H-Benzo[a]fluorene

 Neighbor: 2
Measured:  224 days
Predicted: Five fold cross validation prediction for the neighbor
 148  days

Structural image of Benzo[a]pyrene
Benzo[a]pyrene

 Neighbor: 3
Measured:  22.9 days
Predicted: Five fold cross validation prediction for the neighbor
 83.2  days

Structural image of 1-Methyl phenanthrene
1-Methyl phenanthrene

 Neighbor: 4
Measured:  28.8 days
Predicted: Five fold cross validation prediction for the neighbor
 15.5  days

Structural image of 9-Ethyl-9H-fluorene
9-Ethyl-9H-fluorene

 Neighbor: 5
Measured:  91.2 days
Predicted: Five fold cross validation prediction for the neighbor
 135  days

Structural image of 1-Methylpyrene
1-Methylpyrene