OPERA Model Calculation Details: Biodeg. Half-Life

Structural image of 4-(Benzyloxy)tryptophan
Chemical Identifiers
Preferred name: 4-(Benzyloxy)tryptophan
DTXSID: DTXSID00704814
DTXCID: DTXCID30655562
CASRN: 93879-79-9
Molecular weight: 310.353
Model Results
Model name: OPERA_BioDeg
Model source: OPERA2.8
Property name: Biodeg. Half-Life
Property description: Biodegradation half-life for compounds containing only carbon and hydrogen
Experimental value: Experimental value from OPERA2.8
 N/A
Predicted value: Predicted value from the model
6.61 days
Confidence level:  Confidence level is calculated from the accuracy of the predictions of the five nearest neighbors weighted by their distance to the query chemical
0.446
Combined applicability domain:  Combined applicability domain from multiple AD measures
Outside training set (
Global AD  Global applicability domain via the leverage approach
= 0) and poor local representation (
Local AD index Local applicability domain index is relative to the similarity of the query chemical to its five nearest neighbors from the training set
= 0.219 < 0.4)
Model Performance
Biodeg. Half-Life Model Results Histogram of Biodeg. Half-Life Data
Weighted kNN model statistics
Training (75%) 5-fold CV (75%) Test (25%)
R2 RMSE Q2 RMSE R2 RMSE
0.88 0.26 0.89 0.25 0.75 0.38

Model summary in QSAR Model Reporting Format (QMRF)
Nearest Neighbors from Model Knowledge Base
Neighbor: 1
Measured:  3.02 days
Predicted: Five fold cross validation prediction for the neighbor
 3.72  days

Structural image of 2-Propyltoluene
2-Propyltoluene

 Neighbor: 2
Measured:  28.8 days
Predicted: Five fold cross validation prediction for the neighbor
 15.5  days

Structural image of 9-Ethyl-9H-fluorene
9-Ethyl-9H-fluorene

 Neighbor: 3
Measured:  22.9 days
Predicted: Five fold cross validation prediction for the neighbor
 83.2  days

Structural image of 1-Methyl phenanthrene
1-Methyl phenanthrene

 Neighbor: 4
Measured:  2.00 days
Predicted: Five fold cross validation prediction for the neighbor
 2.75  days

Structural image of 5-Methylindan
5-Methylindan

 Neighbor: 5
Measured:  3.02 days
Predicted: Five fold cross validation prediction for the neighbor
 2.82  days

Structural image of 1H-Indene, 2-methyl-
1H-Indene, 2-methyl-